Publications

Journal

• Gkolemis, V., Gutmann, M. and Pesonen, H. An Extendable Python Implementation of Robust Optimisation Monte Carlo, Journal of Statistical Software, 110(2), 1–26, 2024

• Thorpe, H. et al. Pan-pathogen deep sequencing of nosocomial bacterial pathogens in Italy in spring 2020: a prospective cohort study The Lancet Microbe, 2024

• Belman, S., Pesonen, H., Croucher, N., Bentley, S. D. and Corander, J. (2023) Estimating Between Country Migration in Pneumococcal Populations, G3 Genes|Genomes|Genetics, jkae058, 2024

• Štrumbelj, E. Bouchard-Côté, A., Corander, J., Gelman, A., Rue, H., Murray, L., Pesonen, H., Plummer, M. and Vehtari, A. (2024), Past, Present, and Future of Software for Bayesian Inference, Statistical Science, 39(1):46-61, 2024.

• Pöntinen, A. K. (equal contr.), Gladstone, R. A. (equal contr.), Pesonen, H. (equal contr.), Pesonen, M., Cléon, F., Parcell, B. J., Kallonen, T., Simonsen, G. S., Croucher, N. J., McNally, A., Parkhill, J., Johnsen, P. J., Samuelsen, Ø. and Corander, J. (2024), Modulation of multi-drug resistant clone success in Escherichia coli populations: a longitudinal multi-country genomic and antibiotic usage cohort study. The Lancet Microbe.

• Aushev, A., Tran, T., Pesonen, H., Howes, A. and Kaski, S. (2024) Likelihood-Free Inference in State-Space Models with Unknown Dynamics. Statistics and Computing 34, 27 (2024). https://doi.org/10.1007/s11222-023-10339-8

• Mikkola, P., Martin, O. A., Chandramouli, S., Hartmann, M., Pla, O. A., Thomas, O., Pesonen, H., Corander, J., Vehtari, A., Kaski, S., Bürkner, P.-C. and Klami, A. (2023) Prior knowledge elicitation: The past, present, and future. Bayesian Anal. Advance Publication 1-33 (2023). DOI: 10.1214/23-BA1381

• Kičiatovas, D., Guo, Q., Kailas, M., Pesonen, H., Corander, J., Kaski, S., Pitkänen, E. and Mustonen, V. (2022) Identification of multiplicatively acting modulatory mutational signatures in cancer. BMC Bioinformatics 23, 522 (2022). https://doi.org/10.1186/s12859-022-05060-8

• Pesonen, H., Simola, U., Köhn-Luque, A., Vuollekoski, H., Lai, X., Frigessi, A., Kaski, S., Frazier, D.T., Maneesoonthorn, W., Martin, G.M. and Corander, J. (2022) ABC of the Future. International Statistical Review. 2022.

• Aushev, A., Pesonen, H., Heinonen, M., Corander, J. and Kaski S. (2020) Likelihood-Free Inference with Deep Gaussian Processes Computational Statistics & Data Analysis, 2022, 174:107529

• Pöntinen, A.K. et al., Apparent nosocomial adaptation of Enterococcus faecalis predates the modern hospital era Nature Communications, 12(1):1-13, 2021

• Arstila, V., Georgescu, A.L., Pesonen, H., Lunn, D., Noreika, V. and Falter-Wagner, C.M. (2020) Event timing in human vision: Modulating factors and independent functions PloS one 2020, 15(8):e0226122.

• Kataja, E.-L., Karlsson, L., Leppänen, J.M., Pelto, J., Häikiö, T., Nolvi, S., Pesonen, H., Parsons, C.E., Hyönä, J. and Karlsson, H. (2020) Maternal depressive symptoms during the pre‐and postnatal periods and infant attention to emotional faces Child development 2020, 91(2):e475-e480

• Sikka, P., Pesonen, H. and Revonsuo, A. (2018) Peace of mind and anxiety in the waking state are related to the affective content of dreams Scientific reports 2018, 8(1):1-13

• Salokangas, R.K.R, Schultze-Lutter, F., Schmidt, S.J., Pesonen, H., Luutonen, S., Patterson, P., von Reventlow, H.G., Heinimaa, M., From, T. and Hietala, J., (2020) Childhood physical abuse and emotional neglect are specifically associated with adult mental disorders Journal of Mental Health 2020, 29(4):376-384

• Kallionpää, R.E., Pesonen, H., Scheinin, A. Sandman, N., Laitio, R., Scheinin, H., Revonsuo, A. and Valli, K. (2019) Single-subject analysis of N400 event-related potential component with five different methods International Journal of Psychophysiology 2019, 144:14-24

• Korhonen, L.S., Kortesluoma, S., Lukkarinen, M., Peltola, V., Pesonen, H., Pelto, J., Tuulari, J.J., Lukkarinen, H., Vuorinen, T., Karlsson, H. and Karlsson, L. (2019) Prenatal maternal distress associates with a blunted cortisol response in rhinovirus-positive infants Psychoneuroendocrinology 2019, 107:187-190

• Kataja, E.-L., Karlsson, L., Parsons, C.E., Pelto, J., Pesonen, H., Häikiö, T., Hyönä, J., Nolvi, S., Korja, R. and Karlsson H. (2019) Maternal pre-and postnatal anxiety symptoms and infant attention disengagement from emotional faces Journal of affective disorders, 2019, 243:280-289

• Kokko, J., Remes, U., Thomas, O., Pesonen, H. and Corander, J. (2019) PYLFIRE: Python implementation of likelihood-free inference by ratio estimation Wellcome Open research 2019, 4:197

• Nolvi, S., Uusitupa, H.‐M., Bridgett, D.J., Pesonen, H., Aatsinki, A.‐K. Kataja, E.‐L., Korja, R., Karlsson, H. and Karlsson, L. (2018) Human milk cortisol concentration predicts experimentally induced infant fear reactivity: moderation by infant sex Developmental Science 2018, 21(4):e12625

• Nolvi, S., Bridgett, D.J., Pesonen, H., Korja, R., Kataja, E.‐L., Karlsson, H. and Karlsson, L. (2018) Infant sex moderates the effects of maternal pre‐and postnatal stress on executive functioning at 8 months of age Infancy 2018, 23(2):194-210

• Railo, H., Tuominen, J., Kaasinen, V. and Pesonen, H. (2017) Dynamic changes in cortical effective connectivity underlie transsaccadic integration in humans Cerebral Cortex 2017, 27(7):3609-3617

• Railo, H., Karhu, V.-M., Mast, J., Pesonen, H. and Koivisto, M. (2016) Rapid and accurate processing of multiple objects in briefly presented scenes Journal of Vision 2016, 16(3):8

• Pesonen, M., Pesonen, H. and Nevalainen, J. (2015) Covariance matrix estimation for left-censored data, Computational Statistics & Data Analysis, 2015, 92:13-25

• Aatsinki, A.-K., Uusitupa, H.-M., Munukka, E., Pesonen, H., Rintala, A., Pietilä, S., Lahti, L., Eerola, E., Karlsson, L. and Karlsson, H. (2018) Gut microbiota composition in mid-pregnancy is associated with gestational weight gain but not prepregnancy body mass index Journal of Women’s Health, 2018, 27(10):1293-1301

• Pesonen, H (2011)., A framework for Bayesian receiver autonomous integrity monitoring in urban navigation Navigation, 2011, 58(3):229-240

Preprints

• Ojala, F., Pesonen, H., Gladstone, R. A., Mäklin, T., Tonkin-Hill, G., Marttinen, P. and Corander, J. Basic reproduction number for pandemic Escherichia coli clones is comparable to typical pandemic viruses, 2024

• Pesonen, H. and Corander, J. Stratified distance space improves the efficiency of sequential samplers for approximate Bayesian computation, 2023

• Thomas, O., Sá-Leão, R., de Lencastre, H., Kaski, S., Corander, J. and Pesonen, H. Misspecification-robust likelihood-free inference in high dimensions, 2023

• Thomas, O., Pesonen, H. and Corander, J. Generalised Bayes Updates with f-divergences through Probabilistic Classifiers, 2020

• Thomas, O., Pesonen, H. and Corander, J. Probabilistic elicitation of expert knowledge through assessment of computer simulations, 2020

Conference

• Discussant at panel “Probabilistic Programming” at BayesComp2023, Kittilä, Finland

  • Moderator: Aki Vehtari (Aalto University, Finland)
  • Mitzi Morris (Columbia University, USA)
  • Junpeng Lao (Google, Switzerland)
  • Tor Fjelde (Turing.jl / Cambridge University, United Kingdom)
  • Henri Pesonen (ELFI / Oslo University Hospital, Norway)

• Pesonen, H. and Piché, R. (2011) Bayesian positioning using Gaussian mixture models with time-varying component weights pdf JSM, 2011

• Pesonen, H. and Piché, R. (2010) Cubature-based Kalman filters for positioning 7th Workshop on Positioning, Navigation and Communication, 2010, 45-49

Thesis

Pesonen, H (2013), Bayesian Estimation and Quality Monitoring for Personal Positioning Systems

Lecture materials

• Todennäköisyyslaskennan peruskurssi
• Tilastollisen päättelyn peruskurssi
• Tilastollisia malleja